Narlikar G.J., Fan H.Y., and Kingston R.E., 2002. Cooperation between complexes that regulate chromatin structure and transcription. Cell 108: 475-487.
Noma K., Allis C.D., and Grewal S.L, 2001. Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries. Science 293: 1150-1155.
Nowak S.J. and Corces V.G., 2004. Phosphorylation ofhistone H3: A balancing act between chromosome condensation and transcriptional activation. Trends Genet., 20: 214-220.
Pal S., Yun R., Datta A., Lacomis L., Erdjument-Bromage H., Kumar J., Tempst P., and Sif S., 2003. mSin3A/histone deacetylase 2- and PRMT5-containing Brgl complex is involved in transcriptional repression of the Myc target gene cad. Mol. Cell. Biol. 21: 7475-7487.
Pavri R., Zhu B., Li G., Trojer P., Mandal S., Shiiatifard A., and Reinberg D., 2006. Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell 125: 703-717.
Peterson C.L., 2002. Chromatin remodeling: Nucleosomes bulging at the seams. Curr. Biol. 12: R245-R247.
Raisner R.M., Hartley P.D., Meneghini M.D., Bao M.Z., Liu C.L., Schreiber S.L., Rando O.J., and Madhani H.D., 2005. Histone variant H2A.Z marks the 5’ ends of both active and inactive genes in euchromatin. Cell 123: 233-248.
Rea S., Eisenhaber E, O’Carroll D., Strahl B.D., Sun Z.W., Schmid M., Opravil S., Mechtler K., Pontmg C.P., Allis C.D., and Jenu-wein T., 2000. Regulation of chromatin structure by site-specific histone H3 methyltransferases. Nature 406: 593-599.
Reinberg D. and Sims R.J., III., 2006. de FACTo nucleosome dynamics. J. Biol. Chem.(in press).
Reinke H. and Horz W., 2003. Histones are first hyperacetylated and then lose contact with the activated PH05 promoter. Mol. Cell 11: 1599-1607.
Robzyk K., Recht J., and Osley M.A., 2000. Rad6-dependent ubiq-uitination ofhistone H2B in yeast. Science 287: 501-504.
Roth S.Y., Demi J.M., and Allis C.D., 2001. Histone acetyltrans-ferases. Annu. Rev. Biochem. 70: 81-120.
Sanders S.L., Jennings J., Canutescu A., Link A.J., and Weil P.A., 2002. Proteomics of the eukaryotic transcription machinery: Identification of proteins associated with components of yeast TEIID by multidimensional mass spectrometry. Mol. Cell. Biol. 22: 4723-4738.
Santisteban M.S., Kalashnikova T., and Smith M.M., 2000. Histone H2A.Z regulates transcription and is partially redundant with nucleosome remodeling complexes. Cell 103: 411-422.
Santos-Rosa H., Schneider R., Bannister A. J., Sherriff J., Bernstein B.E., Emre N.C., Schreiber S.L., Mellor J., and Kouzarides T., 2002. Active genes are tri-methylated at K4 ofhistone H3. Nature 419: 407-411.
Sassone-Corsi P., Mizzen C.A., Cheung P., Crosio C, Monaco L., Jacquot S., Hanauer A., and Allis C.D. 1999. Requirement of Rsk-2 for epidermal growth factor-activated phosphorylation of histone H3. Science 285: 886-891.
Schreiber S.L. and Bernstein B.E., 2002. Signaling network model of chromatin. Cell 111: 771-778.
Schurter B.T., Koh S.S., Chen D., Bunick G.J., Harp J.M., Hanson B.L, Henschen-Edman A., Mackay D.R., Stallcup M.R., and Aswad D.W., 2001. Methylation ofhistone H3bycoactivator-asso-ciated arginine methyltransferase 1. Biochemistry 40: 5747-5756.
Sekinger E.A., Moqtaderi Z., and Struhl K., 2005. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol. Cell 18: 735-748.
Shi Y., Lan E., Matson C., Mulligan P., Whetstine J.R., Cole P.A., Casero R.A., and Shi Y., 2004. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119: 941-953.
Shi Y.J., Matson C., Lan E., Iwase S., Baba T., and Shi Y., 2005. Regulation of LSD 1 histone demethylase activity by its associated factors. Mol. Cell. 19: 857-864.
Shiio Y. and Eisenman R.N., 2003. Histone sumoylation is associated with transcriptional repression. Proc. Natl. Acad. Sci. 100: 13225-13230.
Shim E.Y., Woodcock C., and Zaret K.S. 1998. Nucleosome positioning by the winged helix transcription factor HNF3. Genes Dev. 12: 5-10.
Shogren-Knaak M., Ishii H., Sun J.M., Pazin M.J., Davie J.R., and Peterson C.L., 2006. Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311: 844-847.
Sims. R.J.. Belotserkovskaya R., and Reinberg D., 2004. Elongation by RNA polymerase II: The short and long of it. Genes Dev. 18: 2437-2468.
Sims R.J., Chen C.F., Santos-Rosa H., Kouzarides T., Patel S.S., and Reinberg D., 2006. Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J. Biol. Chem. 51: 41789-41792.
Soloaga A., Thomson S., Wiggin G.R., Rampersaud N., Dyson M.H., Hazzalin C.A., Mahadevan L.C., and Arthur J.S., 2003. MSK2 and MSK1 mediate the mitogen- and stress-induced phosphorylation ofhistone H3 and HMG-14. EMBO J. 22: 2788-2797.
Sterner D.E. and Berger S.L., 2000. Acetylation of histones and transcription-related factors. Microbiol. Mol. Biol. Rev. 64: 435-459.
Strahl B.D. and Allis C.D., 2000. The language of covalent histone modifications. Nature 403: 41-45.
Strahl B.D., Briggs S.D., Brame C.J., Caldwell J.A., Koh S.S., Ma H., Cook R.G., Shabanowitz J., Hunt D.E., Stallcup M.R., and Allis C.D., 2001. Methylation ofhistone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1. Curr. Biol. 26: 996-1000.
Sun Z.W. and Allis C.D., 2002. Ubiquitination ofhistone H2B regulates H3 methylation and gene silencing in yeast. Nature 418: 104-108.
Svaren J., Schmitz J., and Horz W. 1994. The transactivation domain of Pho4 is required for nucleosome disruption at the PH05 promoter. EMBO J. 13: 4856-4862.
Taunton J., Hassig C.A., and Schreiber S.L. 1996. A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science 111: 408-411.
Trewick S.C., McLaughlin P.J., and Allshire R.C., 2005. Methylation: Lost in hydroxylation? EMBO Rep. 6: 315-320.
Tsukada Y., Fang J., Erdjument-Bromage H., Warren M.E., Borch-ers C.H., Tempst P., and Zhang Y., 2006. Histone demethylation by a family of JmjC domain-containing proteins. Nature 439: 811-816.
Turner B.M., 2000. Histone acetylation and an epigenetic code. Bioessays 22: 836-45.
Vakoc C.R., Mandat S.A., Olenchock B.A., and Blobel G.A., 2005. Histone H3 lysine 9 methylation and HP1* are associated with transcription elongation through mammalian chromatin. Mol. Cell 19: 381-391.
Vettese-Dadey M., Grant P.A., Hebbes T.R., Crane-Robinson C, Allis C.D., and Workman J.L. 1996. Acetylation ofhistone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. EMBO J. 15: 2508-2518.