When the anger of the viceroy had somewhat subsided, he used great pains to justify himself, in regard to the death of Suarez, explaining the reasons of his conduct in that affair to all who visited him, and endeavouring to convince them that he had just reasons of suspicion, giving a detailed account of all the circumstances respecting the arrest and death of Suarez. He even procured some judicial informations to be drawn up by the licentiate Cepeda, respecting the crimes which he laid to the charge of the commissary, of which the following is an abstract.
"It appeared reasonable to suppose that Suarez must have been privy to the desertion of his nephews, as they lived in his house and could not have gone off without his knowledge. He alleged that Suaraz had not exerted all the care and diligence that were necessary and proper, in several affairs connected with the present troubles which had been confided to him. It was objected to him, that he was particularly interested in opposing the execution of the obnoxious regulations; since he would have been obliged, along with the rest, to give up the lands and Indians he then held as an officer of the crown, which he had not done hitherto on account of the subsisting disturbances in the country. Lastly, the viceroy charged against him, that having entrusted Suarez at the very beginning of the troubles with certain dispatches for his brother, the licentiate Carvajal, who then dwelt at Cuzco, intended for procuring intelligence by his means of what was going on in that city, he had never given or procured any answer on that subject; although it must certainly have been easy for him to have procured intelligence from his brother, by means of the Indian vassals of both, and by those belonging to the king who were at his disposal officially, all of whom dwelt on the road between Lima and Cuzco." Besides that all these allegations carry very little weight in themselves, as evidences of the presumptive guilt of Suarez, none of them were ever satisfactorily established by legal proof.
As the viceroy found that all his affairs had turned out unfortunate, and that every person seemed much discontented in consequence of the death of Suarez, he changed his intention of waiting for Gonzalo Pizarro at Lima, which he had caused fortify in that view with ramparts and bastions. He now resolved to retire to the city of Truxillo, about eighty leagues from Lima, and entirely to abandon and even to dispeople the city of Lima; in the execution of this project he meant to send the invalids, old persons, women, children, and all the valuable effects and baggage belonging to the inhabitants by sea to Truxillo, for which purpose he had sufficient shipping, and to march all who were able to carry arms by land, taking along with him all the European inhabitants of every settlement in the plain between Lima and Truxillo; and sending off all the Indian population of the plain to the mountainous region. By these decisive measures, he hoped to reduce the adherents of Gonzalo Pizarro to such straits, by depriving them of every possible succour and refreshment, after the fatigues of a long and painful march, encumbered with baggage and artillery, as might constrain them to disband their army, when they might find the whole way between Lima and Truxillo reduced to a desert entirely devoid of provisions. The viceroy considered himself under the necessity of employing these strong measures, as some of his people deserted from him almost daily to the enemy, in proportion as the insurgents approached towards Lima.
In pursuance of this resolution, on Tuesday the 15th of September, two days after the slaughter of the commissary Suarez, the viceroy gave orders to Diego Alvarez de Cueto, with a party of horse, to convey the children of the late Marquis Pizarro on board ship, and to remain in charge of them and the licentiate Vaca de Castro. On this occasion, he gave the command of the fleet to Cueto, being afraid lest Don Antonio de Ribera and his wife, who then had the charge of young Don Gonzalo and his brothers, children of the late marquis, might conceal them and give them up to their uncle. This measure occasioned much emotion among the inhabitants of Lima, and gave great offence to the oydors or judges of the royal audience, particularly to the licentiate Ortiz de Zarate, who made strong remonstrances to the viceroy against sending Donna Francisco Pizarro among the sailors and soldiers, where she could not reside in decent comfort. This young lady, who was both beautiful and rich, was now almost grown a woman, and the conduct of the viceroy towards her on this occasion was considered as harsh, tyrannical, and unnecessary. Ortiz was unable to prevail on the viceroy to recall his orders respecting the children of the late marquis; and he even openly declared that he had come to the resolution of abandoning Lima in the way already mentioned. All the oydors considered these intended steps as highly improper and ruinous to the colony; and declared, that as they had been ordered by his majesty to take up their residence in Lima, they were determined not to quit that place without a new royal order for the express purpose. As the viceroy found that every thing he could say was quite ineffectual to bring over the oydors to his sentiments, he resolved to gain possession of the royal seal, and to carry it off with himself to Truxillo, by which measure the oydors would be reduced to the state of private persons in Lima, and unable to hold any sitting of the royal audience, unless they chose to accompany him to Truxillo. When this resolution of the viceroy was communicated to the oydors, they called the chancellor before them, from whom they took the seal, which they committed to the custody of the licentiate Cepeda, the senior oydor. This was done by three of the oydors, Cepeda, Texada, and Alvarez, Ortiz being absent at the time.
On the same evening, all the four oydors assembled in the house of Cepeda, and agreed to present a formal requisition to the viceroy to bring back the family of the late marquis from the fleet in which he had embarked them. After this resolution had been engrossed in the register, the licentiate Ortiz retired to his own house, being indisposed. The other three oydors continued in consultation on the measures which were proper to be adopted, for defending themselves against the power of the viceroy, in case he should persist in his plans, and endeavour to make them embark by force, which they publickly asserted was his intention. On this occasion, they drew up an ordinance or public act, by which, in the name and authority of the king "they commanded all the inhabitants of the city of Lima, captains, soldiers, and others, civil and military, in case the viceroy should give orders to remove them, the oydors of the royal audience, by force and violence from Lima, that they should aid, assist, and defend them, in opposition to such a measure, as illegal and unjust, and contrary to the orders of his majesty, clearly expressed in the new regulations, and in the commission granted to them as oydors of the royal audience."
Having formally extended and authenticated this act, they communicated it in secret to Captain Martin de Robles, whom they desired to hold himself and his soldiers in readiness to defend them in case of need. De Robles engaged to stand by them; for though one of the captains in the troops, he was not on good terms with the viceroy. Several other persons of importance in the city, to whom the oydors communicated the resolutions which they had formed, promised likewise to stand by them against the tyranny of the viceroy. That same evening, all who were in concert with the oydors held themselves in readiness, anxiously waiting the event of an open breach between the viceroy and the judges of the royal audience. However secret the steps taken by the oydors might have been, they became known to the viceroy, or at least he entertained violent suspicions of their nature and tendency. At night-fall, Martin de Robles went privately to the house of the oydor Cepeda, to whom he communicated his opinion that the viceroy was already informed of all their proceedings, and that, unless prompt measures were taken for their security, they would all be put to death. Cepeda sent immediately for Alvarez and Texada, two others of the oydors; and these three came immediately to the determination of openly defending themselves against the viceroy, if he should attempt their arrest. For this purpose, several of their friends, and some of the soldiers of the company, commanded by De Robles, assembled in arms at their residence. While this was going on, Urbina the maestre de campo or major-general, when going his rounds met several of these soldiers in the street, and immediately suspected the truth. He went, therefore, straight to the viceroy, to whom he communicated the suspicious circumstances he had observed, that some prompt measures might be concerted for counteracting the machinations of the oydors. The viceroy desired him to fear nothing, as they had only civilians to deal with, who had not sufficient courage to concert any enterprize against his authority. Urbina went away accordingly to continue his round; but as he still continued to meet several armed horsemen in the streets, all of whom were going towards the house of Cepeda, he returned again to the palace, and remonstrated with the viceroy on the absolute necessity of taking instant measures of defence. The viceroy immediately put on his armour and ordered to sound an alarm, after which he went out into the great square before the palace, accompanied by his nightly guard of a hundred soldiers and all his domestic establishment, meaning to have proceeded to the house of Cepeda, to arrest the oydors, to chastise the mutineers, and to re-establish order in the city. While in the great square near the gate of the palace, he noticed that it was impossible to prevent the soldiers from going to join the oydors, as the horsemen who filled all the streets constrained them to take that direction. If, however, the viceroy had persisted in his first design, he could hardly have found much difficulty or considerable resistance, as he then had a greatly superior force to what had assembled with Cepeda and the other judges. He was disuaded from executing these intentions by Alfonzo Palomino, alcalde or police-judge of Lima, who asserted that a great majority of the troops were assembled at the house of Cepeda, and were about to attack him; for which reason, the best measure was to fortify himself in the palace, which could easily be defended; whereas he had not a sufficient force to assail the oydors and their adherents. Influenced by this advice, the viceroy retired into the palace, accompanied by his brother Vela Nunnez, Paul de Meneses, Jerom de la Cerna, Alfonso de Caceres, Diego de Urbina, and others of his friends and followers, with all his relations and servants. The hundred soldiers of the nightly guard were posted at the great gate of the palace, with orders to prevent any one from going in.